I have the Batman: The Complete Animated Series Blu-Ray Box set (UPC 883929638482). I’ve recently gone back and added it as a Box set entry instead of a Single Entry. The Box set info has the three seasons in the box set and 2 movies (Mask of the Phantasm, Batman & Mr. Freeze: Subzero) spread across 4 seasons of Batman: The Animated Series and 2 Seasons of The New Batman Adventures. The episodes are completely out of order based on the ordering in the blu-ray set.
Episode Order across 6 Seasons and 2 Series
Batman: The Animated Series: Season 1
1 The Cat and the Claw: Part I
2 On Leather Wings
3 Heart of Ice
4 Feat of Clay: Part I
5 Feat of Clay: Part II
6 It’s Never Too Late
7 Joker’s Favor
8 The Cat and the Claw: Part II
9 Pretty Poison
10 Nothing to Fear
11 Be a Clown
12 Appointment in Crime Alley
13 P.O.V.
14 The Clock King
15 The Last Laugh
16 Eternal Youth
17 Two-Face: Part I
18 Two-Face: Part II
19 Fear of Victory
20 I’ve Got Batman in My Basement
21 Vendetta
22 Prophecy of Doom
23 The Forgotten
24 Mad as a Hatter
25 The Cape and Cowl Conspiracy
26 Perchance to Dream
27 The Underdwellers
28 Night of the Ninja
29 The Strange Secret of Bruce Wayne
30 Tyger Tyger
31 Dreams in Darkness
32 Beware the Gray Ghost
33 Cat Scratch Fever
34 I Am the Night
35 Almost Got 'im
36 Moon of the Wolf
37 Terror in the Sky
38 Christmas with the Joker
39 Heart of Steel: Part I
40 Heart of Steel: Part II
41 If You’re So Smart, Why Aren’t You Rich?
42 Joker’s Wild
43 His Silicon Soul
44 Off Balance
45 What Is Reality?
46 The Laughing Fish
47 Harley and Ivy
48 The Mechanic
49 The Man Who Killed Batman
50 Zatanna
51 Robin’s Reckoning: Part I
52 Birds of a Feather
53 Robin’s Reckoning: Part II
54 Blind as a Bat
55 Day of the Samurai
56 See No Evil
57 The Demon’s Quest: Part I
58 The Demon’s Quest: Part II
59 Read My Lips
60 Fire from Olympus
Batman: The Animated Series: Season 2
1 Shadow of the Bat: Part I 22 min | Sep 13, 1993
2 Shadow of the Bat: Part II 22 min | Sep 14, 1993
3 Mudslide 22 min | Sep 15, 1993
4 The Worry Men 22 min | Sep 16, 1993
5 Paging the Crime Doctor 22 min | Sep 17, 1993
6 House & Garden 22 min | May 02, 1994
7 Sideshow 22 min | May 03, 1994
8 Avatar 22 min | May 09, 1994
9 Trial 22 min | May 16, 1994
10 Harlequinade
Batman: The Animated Series: Season 3
1 Bane 22 min | Sep 10, 1994
2 Second Chance 22 min | Sep 17, 1994
3 Riddler’s Reform 22 min | Sep 24, 1994
4 Baby-Doll 22 min | Oct 01, 1994
5 Time Out of Joint 22 min | Oct 08, 1994
6 Harley’s Holiday 22 min | Oct 15, 1994
7 Make 'Em Laugh 22 min | Nov 05, 1994
8 Batgirl Returns 22 min | Nov 12, 1994
9 Lock-Up 22 min | Nov 19, 1994
10 Deep Freeze
Batman: The Animated Series: Season 4
1 The Terrible Trio 22 min | Sep 11, 1995
2 Showdown 22 min | Sep 12, 1995
3 Catwalk 22 min | Sep 13, 1995
4 A Bullet for Bullock 21 min | Sep 14, 1995
5 The Lion and the Unicorn
The New Batman Adventures: Season 1
1 Holiday Knights 22 min | Sep 13, 1997
2 Sins of the Father 22 min | Sep 20, 1997
3 Cold Comfort 22 min | Oct 11, 1997
4 Never Fear 22 min | Nov 01, 1997
5 You Scratch My Back 20 min | Nov 15, 1997
6 Double Talk 21 min | Nov 22, 1997
7 Joker’s Millions 22 min | Feb 21, 1998
8 Growing Pains 22 min | Feb 28, 1998
9 Mean Seasons 22 min | Apr 25, 1998
10 The Demon Within 22 min | May 09, 1998
11 Over the Edge 22 min | May 23, 1998
12 Torch Song 21 min | Jun 13, 1998
13 Love Is a Croc
The New Batman Adventures: Season 2
1 The Ultimate Thrill 22 min | Sep 14, 1998
2 Critters 22 min | Sep 18, 1998
3 Cult of the Cat 22 min | Sep 19, 1998
4 Animal Act 21 min | Sep 26, 1998
5 Old Wounds 22 min | Oct 03, 1998
6 Legends of the Dark Knight 20 min | Oct 10, 1998
7 Girl’s Night Out 21 min | Oct 17, 1998
8 Chemistry 22 min | Oct 24, 1998
9 Judgment Day 21 min | Oct 31, 1998
10 Beware the Creeper 21 min | Nov 07, 1998
11 Mad Love
Order in the blu-ray set
Season One
1 On Leather Wings 22 min | Sep 06, 1992
2 Christmas with the Joker 22 min | Nov 13, 1992
3 Nothing to Fear 22 min | Sep 15, 1992
4 The Last Laugh 22 min | Sep 22, 1992
5 Pretty Poison 22 min | Sep 14, 1992
6 The Underdwellers 22 min | Oct 21, 1992
7 P.O.V. 22 min | Sep 18, 1992
8 The Forgotten 22 min | Oct 08, 1992
9 Be a Clown 22 min | Sep 16, 1992
10 Two-Face: Part I 22 min | Sep 25, 1992
11 Two-Face: Part II 22 min | Sep 28, 1992
12 It’s Never Too Late 22 min | Sep 10, 1992
13 I’ve Got Batman in My Basement 22 min | Sep 30, 1992
14 Heart of Ice 22 min | Sep 07, 1992
15 The Cat and the Claw: Part I 22 min | Sep 05, 1992
16 The Cat and the Claw: Part II 22 min | Sep 12, 1992
17 See No Evil 22 min | Feb 24, 1993
18 Beware the Gray Ghost 22 min | Nov 04, 1992
19 Prophecy of Doom 22 min | Oct 06, 1992
20 Feat of Clay: Part I 22 min | Sep 08, 1992
21 Feat of Clay: Part II 22 min | Sep 09, 1992
22 Joker’s Favor 22 min | Sep 11, 1992
23 Vendetta 22 min | Oct 05, 1992
24 Fear of Victory 22 min | Sep 29, 1992
25 The Clock King 22 min | Sep 21, 1992
26 Appointment in Crime Alley 22 min | Sep 17, 1992
27 Mad as a Hatter 22 min | Oct 12, 1992
28 Dreams in Darkness 22 min | Nov 03, 1992
29 Eternal Youth 22 min | Sep 23, 1992
30 Perchance to Dream 22 min | Oct 19, 1992
31 The Cape and Cowl Conspiracy 22 min | Oct 14, 1992
32 Robin’s Reckoning: Part I 22 min | Feb 07, 1993
33 Robin’s Reckoning: Part II 22 min | Feb 14, 1993
34 The Laughing Fish 22 min | Jan 10, 1993
35 Night of the Ninja 22 min | Oct 26, 1992
36 Cat Scratch Fever 22 min | Nov 05, 1992
37 The Strange Secret of Bruce Wayne 22 min | Oct 29, 1992
38 Heart of Steel: Part I 22 min | Nov 16, 1992
39 Heart of Steel: Part II 22 min | Nov 17, 1992
40 If You’re So Smart, Why Aren’t You Rich? 22 min | Nov 18, 1992
41 Joker’s Wild 22 min | Nov 19, 1992
42 Tyger Tyger 22 min | Oct 30, 1992
43 Moon of the Wolf 22 min | Nov 11, 1992
44 Day of the Samurai 22 min | Feb 23, 1993
45 Terror in the Sky 22 min | Nov 12, 1992
46 Almost Got 'im 22 min | Nov 10, 1992
47 Birds of a Feather 22 min | Feb 08, 1993
48 What Is Reality? 22 min | Nov 24, 1992
49 I Am the Night 22 min | Nov 09, 1992
50 Off Balance 22 min | Nov 23, 1992
51 The Man Who Killed Batman 22 min | Feb 01, 1993
52 Mudslide
53 Paging the Crime Doctor
54 Zatanna 22 min | Feb 02, 1993
55 The Mechanic 22 min | Jan 24, 1993
56 Harley and Ivy
57 Shadow of the Bat Part One
58 Shadow of the Bat Part Two
59 Blind as a Bat 22 min | Feb 22, 1993
60 The Demon’s Quest: Part I 22 min | May 03, 1993
61 The Demon’s Quest: Part II 22 min | May 04, 1993
62 His Silicon Soul 22 min | Nov 20, 1992
63 Fire from Olympus 22 min | May 24, 1993
64 Read My Lips 22 min | May 10, 1993
65 The Worry Men
Season Two
1 Sideshow 22 min | May 03, 1994
2 A Bullet for Bullock
3 Trial 22 min | May 16, 1994
4 Avatar 22 min | May 09, 1994
5 House & Garden 22 min | May 02, 1994
6 The Terrible Two
7 Harlequinade 22 min | May 23, 1994
8 Time Out of Joint
9 Catwalk
10 Bane
11 Baby-Doll
12 The Lion and the Unicorn
13 Showdown
14 Riddler’s Reform
15 Second Chance
16 Harley’s Holiday
17 Lock-Up
18 Make 'Em Laugh
19 Deep Freeze
20 Batgirl Returns
Season Three
1 Holiday Knights
2 Sins of the Father
3 Cold Comfort
4 Double Talk
5 You Scratch My Back
6 Never Fear
7 Joker’s Millions
8 Growing Pains
9 Love Is a Croc
10 Torch Song
11 The Ultimate Thrill
12 Over The Edge
13 Mean Seasons
14 Critters
15 Cult of the Cat
16 Animal act
17 Old Wounds
18 The Demon Within
19 Legends of the Dark Knight
20 Girl’s Night Out
21 Mad Love
22 Chemistry
23 Beware the Creeper
24 Judgment Day
Is there a way to create correct profiles?